Services · Molecular Dynamics Simulation
Molecular Dynamics Simulation
Protein-system MD simulation with standard stability analyses
Service description
MD simulation captures atomic dynamics over nanosecond to microsecond timescales. We prepare the system (solvent, ions, pH), run minimization and equilibration, then production. Analyses include RMSD, RMSF, radius of gyration, interaction maps and energies.
What's included:- System setup (solvent, ions, pH)
- Minimization & equilibration
- Production run (100ns+)
- RMSD / RMSF / Rg analysis
- Interaction maps & energies
- Publication-quality plots
- Send protein structure
- System preparation
- Equilibration & production
- Data analysis
- Delivery: report + trajectories
Deliverables
Stability report + trajectories + analytical plots
Contact us to start
Send your project details and samples via the contact page or email — the first consultation is free.